tgstkFiniteDifferenceReactionDiffusionTumourGrowthFilter.h

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/*==========================================================================
 
  This file is part of the Tumor Growth Simulation ToolKit (TGSTK)
  (<https://github.com/cormarte/TGSTK>, <https://cormarte.github.io/TGSTK>).
 
  Copyright (C) 2021  Corentin Martens
 
  This program is free software: you can redistribute it and/or modify
  it under the terms of the GNU General Public License as published by
  the Free Software Foundation, either version 3 of the License, or
  (at your option) any later version.
 
  This program is distributed in the hope that it will be useful,
  but WITHOUT ANY WARRANTY; without even the implied warranty of
  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  GNU General Public License for more details.
 
  You should have received a copy of the GNU General Public License
  along with this program. If not, see <https://www.gnu.org/licenses/>.
 
  Contact: corentin.martens@ulb.be
 
==========================================================================*/
 
#ifndef TGSTKFINITEDIFFERENCEREACTIONDIFFUSIONTUMOURGROWTHFILTER_H
#define TGSTKFINITEDIFFERENCEREACTIONDIFFUSIONTUMOURGROWTHFILTER_H
 
#include <tgstk/algorithms/tgstkImageProcessorBase.h>
 
class TGSTK_EXPORT tgstkFiniteDifferenceReactionDiffusionTumourGrowthFilter : public virtual tgstkImageProcessorBase {
 
    public:
 
        tgstkFiniteDifferenceReactionDiffusionTumourGrowthFilter();
        ~tgstkFiniteDifferenceReactionDiffusionTumourGrowthFilter();
 
        bool check();
        void execute();
 
        vtkSmartPointer<vtkImageData> getFinalCellDensityImage();
 
        vtkSmartPointer<vtkImageData> getFinalCellDensityGradientImage();
 
 
        void setBrainMapImage(vtkImageData* image);
 
        void setDiffusionTensorImage(vtkSmartPointer<vtkImageData> image);
 
        void setInitialCellDensityImage(vtkSmartPointer<vtkImageData> image);
 
        void setProliferationRateImage(vtkSmartPointer<vtkImageData> image);
 
        void setSimulatedTime(double time);
 
        void setTimeStep(double step);
 
        //void setCoreProliferationRate(double proliferationRate);
        //void setNonCoreProliferationRate(double proliferationRate);
 
    private:
 
        //double coreProliferationRate;
        //double nonCoreProliferationRate;
        double simulatedTime;
        double timeStep;
 
        vtkSmartPointer<vtkImageData> brainMapImage;
        vtkSmartPointer<vtkImageData> finalCellDensityImage;
        vtkSmartPointer<vtkImageData> finalCellDensityGradientImage;
        vtkSmartPointer<vtkImageData> initialCellDensityImage;
        vtkSmartPointer<vtkImageData> proliferationRateImage;
        vtkSmartPointer<vtkImageData> diffusionTensorImage;
};
 
#endif // TGSTKFINITEDIFFERENCEREACTIONDIFFUSIONTUMOURGROWTHFILTER_H